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qPCR4vir
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154
CMakeLists.txt
154
CMakeLists.txt
@ -64,37 +64,6 @@ option(NANA_CMAKE_BOOST_FILESYSTEM_FORCE "Force use of Boost filesystem if avail
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#set(NANA_LINKS "${NANA_LINKS} ${NANA_CMAKE_BOOST_FILESYSTEM_LIB}")
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#set(NANA_LINKS "${NANA_LINKS} ${NANA_CMAKE_BOOST_FILESYSTEM_LIB}")
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if (NANA_CMAKE_NANA_FILESYSTEM_FORCE)
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add_definitions(-DNANA_FILESYSTEM_FORCE)
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elseif (NANA_CMAKE_STD_FILESYSTEM_FORCE)
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add_definitions(-DSTD_FILESYSTEM_FORCE)
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elseif (NANA_CMAKE_FIND_BOOST_FILESYSTEM OR NANA_CMAKE_BOOST_FILESYSTEM_FORCE)
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if (NANA_CMAKE_BOOST_FILESYSTEM_FORCE)
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add_definitions(-DNANA_BOOST_FILESYSTEM_FORCE)
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endif(NANA_CMAKE_BOOST_FILESYSTEM_FORCE)
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# https://cmake.org/cmake/help/git-master/module/FindBoost.html
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# Implicit dependencies such as Boost::filesystem requiring Boost::system will be automatically detected and satisfied,
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# even if system is not specified when using find_package and if Boost::system is not added to target_link_libraries.
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# If using Boost::thread, then Thread::Thread will also be added automatically.
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find_package(Boost COMPONENTS filesystem)
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if (Boost_FOUND)
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add_definitions(-DNANA_BOOST_FILESYSTEM_AVAILABLE)
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include_directories(SYSTEM "${Boost_INCLUDE_DIR}")
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#set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${Boost_LIBRARIES}")
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set(NANA_LINKS "${NANA_LINKS} ${Boost_LIBRARIES}") ###### FIRST !!!!!!!!!!!!!!!!! add is not first
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#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Boost_LIBRARIES}")
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endif (Boost_FOUND)
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set(Boost_USE_STATIC_LIBS ON)
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set(Boost_USE_STATIC_RUNTIME ON) # ??
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#set(Boost_USE_MULTITHREADED ON)
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endif (NANA_CMAKE_NANA_FILESYSTEM_FORCE)
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########### Compatibility with CMake 3.1
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########### Compatibility with CMake 3.1
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@ -154,6 +123,52 @@ if(UNIX)
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endif(UNIX)
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endif(UNIX)
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########### Compliers
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#
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# Using gcc: gcc 4.8 don't sopourt C++14 and make_unique. You may want to update at least to 4.9.
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# In Windows, the gcc which come with CLion was 4.8 from MinGW. You may want to install MinGW-w64 from the
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# TDM-GCC Compiler Suite for Windows which will update you to gcc 5.1.
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# gcc 5.3 and 5.4 include filesytem, but you need to add the link flag: -lstdc++fs
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#
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# see at end of: https://gcc.gnu.org/onlinedocs/libstdc++/manual/using_dynamic_or_shared.html
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# set compile flags
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if(CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang") # Clang || GNU
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if ("${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=gnu++14 -Wall") # Clang
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else ("${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++14 -Wall") # GNU
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endif("${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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endif(CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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# enable static linkage
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if (CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang" AND NOT MINGW) # GNU || CLang not MinGW
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#set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
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set(CMAKE_EXE_LINKER_FLAGS "-static-libgcc -static-libstdc++ -pthread")
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if(CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.3)
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# IS_GNUCXX < 5.3
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else(CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.3)
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set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -lstdc++fs") # IS_GNUCXX 5.3 or more
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set(NANA_LINKS "${NANA_LINKS} -lstdc++fs")
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endif(CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.3)
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endif (CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang" AND NOT MINGW)
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if (APPLE AND "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang") # APPLE Clang
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set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -stdlib=libstdc++")
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endif ()
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# set (CMAKE_STATIC_LINKER_FLAGS "${CMAKE_STATIC_LINKER_FLAGS} ${CMAKE_EXE_LINKER_FLAGS}")
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############# Optional libraries
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############# Optional libraries
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#Find PNG
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#Find PNG
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@ -203,6 +218,39 @@ if(NANA_CMAKE_ENABLE_AUDIO)
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endif(UNIX)
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endif(UNIX)
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endif(NANA_CMAKE_ENABLE_AUDIO)
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endif(NANA_CMAKE_ENABLE_AUDIO)
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if (NANA_CMAKE_NANA_FILESYSTEM_FORCE)
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add_definitions(-DNANA_FILESYSTEM_FORCE)
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elseif (NANA_CMAKE_STD_FILESYSTEM_FORCE)
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add_definitions(-DSTD_FILESYSTEM_FORCE)
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elseif (NANA_CMAKE_FIND_BOOST_FILESYSTEM OR NANA_CMAKE_BOOST_FILESYSTEM_FORCE)
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if (NANA_CMAKE_BOOST_FILESYSTEM_FORCE)
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add_definitions(-DNANA_BOOST_FILESYSTEM_FORCE)
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endif(NANA_CMAKE_BOOST_FILESYSTEM_FORCE)
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# https://cmake.org/cmake/help/git-master/module/FindBoost.html
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# Implicit dependencies such as Boost::filesystem requiring Boost::system will be automatically detected and satisfied,
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# even if system is not specified when using find_package and if Boost::system is not added to target_link_libraries.
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# If using Boost::thread, then Thread::Thread will also be added automatically.
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find_package(Boost COMPONENTS filesystem)
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if (Boost_FOUND)
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add_definitions(-DNANA_BOOST_FILESYSTEM_AVAILABLE)
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include_directories(SYSTEM "${Boost_INCLUDE_DIR}")
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#set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${Boost_LIBRARIES}")
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set(NANA_LINKS "${NANA_LINKS} ${Boost_LIBRARIES}") ###### FIRST !!!!!!!!!!!!!!!!! add is not first
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#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Boost_LIBRARIES}")
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endif (Boost_FOUND)
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set(Boost_USE_STATIC_LIBS ON)
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set(Boost_USE_STATIC_RUNTIME ON) # ??
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#set(Boost_USE_MULTITHREADED ON)
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endif (NANA_CMAKE_NANA_FILESYSTEM_FORCE)
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if(NANA_CMAKE_VERBOSE_PREPROCESSOR)
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if(NANA_CMAKE_VERBOSE_PREPROCESSOR)
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add_definitions(-DVERBOSE_PREPROCESSOR)
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add_definitions(-DVERBOSE_PREPROCESSOR)
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endif(NANA_CMAKE_VERBOSE_PREPROCESSOR)
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endif(NANA_CMAKE_VERBOSE_PREPROCESSOR)
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@ -240,7 +288,7 @@ endforeach(subdir ${NANA_SOURCE_SUBDIRS})
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include_directories(${NANA_INCLUDE_DIR})
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include_directories(${NANA_INCLUDE_DIR})
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add_library(${PROJECT_NAME} ${sources} )
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add_library(${PROJECT_NAME} ${sources} )
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target_link_libraries(${PROJECT_NAME}${NANA_LINKS})
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target_link_libraries(${PROJECT_NAME} ${NANA_LINKS})
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# Headers: use INCLUDE_DIRECTORIES
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# Headers: use INCLUDE_DIRECTORIES
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# Libraries: use FIND_LIBRARY and link with the result of it (try to avoid LINK_DIRECTORIES)
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# Libraries: use FIND_LIBRARY and link with the result of it (try to avoid LINK_DIRECTORIES)
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@ -323,48 +371,6 @@ if (NANA_CMAKE_BUILD_DEMOS)
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endif (NANA_CMAKE_BUILD_DEMOS)
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endif (NANA_CMAKE_BUILD_DEMOS)
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#
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# Using gcc: gcc 4.8 don't sopourt C++14 and make_unique. You may want to update at least to 4.9.
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# In Windows, the gcc which come with CLion was 4.8 from MinGW. You may want to install MinGW-w64 from the
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# TDM-GCC Compiler Suite for Windows which will update you to gcc 5.1.
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# gcc 5.3 and 5.4 include filesytem, but you need to add the link flag: -lstdc++fs
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#
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# see at end of: https://gcc.gnu.org/onlinedocs/libstdc++/manual/using_dynamic_or_shared.html
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# set compile flags
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if(CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang") # Clang || GNU
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if ("${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=gnu++14 -Wall") # Clang
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else ("${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++14 -Wall") # GNU
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endif("${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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endif(CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang")
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# enable static linkage
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if (CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang" AND NOT MINGW) # GNU || CLang not MinGW
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#set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
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set(CMAKE_EXE_LINKER_FLAGS "-static-libgcc -static-libstdc++ -pthread")
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if(CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.3)
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# IS_GNUCXX < 5.3
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else(CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.3)
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set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -lstdc++fs") # IS_GNUCXX 5.3 or more
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set(NANA_LINKS "${NANA_LINKS} -lstdc++fs")
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endif(CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.3)
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endif (CMAKE_COMPILER_IS_GNUCXX OR "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang" AND NOT MINGW)
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if (APPLE AND "${CMAKE_CXX_COMPILER_ID}" MATCHES "Clang") # APPLE Clang
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set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -stdlib=libstdc++")
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endif ()
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# set (CMAKE_STATIC_LINKER_FLAGS "${CMAKE_STATIC_LINKER_FLAGS} ${CMAKE_EXE_LINKER_FLAGS}")
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message ( "CMAKE_CXX_COMPILER_ID = " ${CMAKE_CXX_COMPILER_ID})
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message ( "CMAKE_CXX_COMPILER_ID = " ${CMAKE_CXX_COMPILER_ID})
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message ( "COMPILER_IS_CLANG = " ${COMPILER_IS_CLANG})
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message ( "COMPILER_IS_CLANG = " ${COMPILER_IS_CLANG})
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